# If running directly on a cluster make the cluster queue the default
# destination for parallel jobs.  For all other systems, do not specify
# a default parallel or serial destination so jobs will, by default,
# be run on the local machine.
IFHOST { "ec6.ucsf.edu" }
DefaultParallelQueue "ec6"
ENDIF
IFHOST { "ec30.ucsf.edu" }
DefaultParallelQueue "ec30"
ENDIF

# If running directly on gpu, make the gpu1 queue the default destination
# for serial jobs.
IFHOST { "gpu1.ucsf.edu" }
DefaultSerialQueue "gpu1"
ENDIF

# Collect all the MSG multiprocessor hosts.

IFHOST { "lbox5.ucsf.edu" "lbox6.ucsf.edu" "lbox7.ucsf.edu" "lbox8.ucsf.edu" }
HOST
IsCluster false
DefaultProcessorCount 2
StatusCommand "w"
ENDIF

IFHOST { "venus" }
HOST
IsCluster false
DefaultProcessorCount 8
StatusCommand "w"
ENDIF

# Collect all the MSG cluster hosts.

IFHOST { "ec3.ucsf.edu" }
HOST
Description "Is a cluster of 9 dual-processor x86 Linux machines.
Each machine has 1.9 GB of memory, 0.9 GB of swap space, and two
3.2 GHz Pentium 4 processors."
IsCluster true
AutoGeneratedMachinesFile false
DefaultProcessorCount 17
DefaultMachinesFile "/home/eric/mpirecon/machines"
DefaultLoginCommand "ssh -x"
DefaultBackgroundLoginOption "-n"
DefaultMPIRunCommand "/opt/mpich/gnu/bin/mpirun -machinefile /home/eric/mpirecon/machines"
StatusCommand "w"
ENDIF

IFHOST { "ec4.ucsf.edu" }
HOST
Description "Is a cluster of 8 dual-processor x86_64 Linux machines.
Each machine has 1.9 GB of memory, 0.9 GB of swap space, and two
3.2 GHz Pentium 4 processors."
IsCluster true
# Only get an automatically generated machines file if one runs through
# the queue.
AutoGeneratedMachinesFile false
# Reserve one processor on the head node for system support tasks.
DefaultProcessorCount 15
DefaultMachinesFile "/home/eric/mpirecon/machines"
DefaultLoginCommand "ssh -x"
DefaultBackgroundLoginOption "-n"
DefaultMPIRunCommand "/opt/mpich/gnu/bin/mpirun -machinefile /home/eric/mpirecon/machines"
StatusCommand "w; /opt/gridengine/bin/lx24-amd64/qstat -f"
ENDIF

IFHOST { "ec6.ucsf.edu" }
HOST
Description "Is a cluster of 9 dual-processor x86_64 Linux machines.
Each machine has 1.9 GB of memory, 0.9 GB of swap space, and two
3.2 GHz Pentium 4 processors."
IsCluster true
# Only get an automatically generated machines file if one runs through
# the queue.
AutoGeneratedMachinesFile false
# Reserve one processor on the head node for system support tasks.
DefaultProcessorCount 17
DefaultMachinesFile "/home/eric/mpirecon/machines"
DefaultLoginCommand "ssh -x"
DefaultBackgroundLoginOption "-n"
DefaultMPIRunCommand "/opt/mpich/gnu/bin/mpirun -machinefile /home/eric/mpirecon/machines"
StatusCommand "w; /opt/gridengine/bin/lx24-amd64/qstat -f"
ENDIF

# For the record this is an entry appropriate for ec20; here it is disabled
# by the enclosing IFHOST { } ... ENDIF construct.
IFHOST { }
HOST
Description "Is a cluster of 4 dual-processor x86_64 Linux machines.
Each machine has 1.9 GB of memory, 0.9 GB of swap space, and two
3.2 GHz Pentium 4 processors."
IsCluster true
# Only get an automatically generated machines file if one runs through
# the queue.
AutoGeneratedMachinesFile false
# Reserve one processor on the head node for system support tasks.
DefaultProcessorCount 7
DefaultMachinesFile "/home/eric/mpirecon/machines"
DefaultLoginCommand "ssh -x"
DefaultBackgroundLoginOption "-n"
DefaultMPIRunCommand "/opt/mpich/gnu/bin/mpirun -machinefile /home/eric/mpirecon/machines"
StatusCommand "w; /opt/gridengine/bin/lx24-amd64/qstat -f"
ENDIF

IFHOST { "ec30.ucsf.edu" }
HOST
Description "Is a cluster of 4 dual-processor x86_64 Linux machines.
Each machine has 1.9 GB of memory, 0.9 GB of swap space, and two
3.2 GHz Pentium 4 processors."
IsCluster true
AutoGeneratedMachinesFile true
# Reserve one processor on the head node for system support tasks.
DefaultProcessorCount 7
DefaultMachinesFile "/home/eric/mpirecon/machines"
DefaultLoginCommand "ssh -x"
DefaultBackgroundLoginOption "-n"
DefaultMPIRunCommand "/opt/mpich/gnu/bin/mpirun -machinefile /home/eric/mpirecon/machines"
StatusCommand "w; /opt/gridengine/bin/lx24-amd64/qstat -f"
ENDIF

# Define a generic host.
HOST
IsCluster false
DefaultProcessorCount 1
StatusCommand "w"

# Collect all the MSG compute queues.

# Restricted for x-ray use only.
#QUEUE
#Name "alin256"
#Description "Submits a job to one of 8 Alpha Linux machines.
#Each has 512 MB of memory, 1.9 GB of swap space, and a 617 MHz EV67 processor."
#AcceptsSerial true
#AcceptsParallel false
#IsCluster false
#SubmissionCommand "rsh -n mic /usr/pbs/bin/qsub -m abe -q alin256"
#StatusCommand "rsh mic /usr/pbs/bin/qstat -q alin256"

QUEUE
Name "ec6"
Description "Submits a job to a cluster of 9 dual-processor x86_64 Linux
machines.  Each machine has 1.9 GB of memory, 0.9 GB of swap space, and two
3.2 GHz Pentium 4 processors."
AcceptsSerial false
AcceptsParallel true
IsCluster true
AutoGeneratedMachinesFile true
# Reserve one processor on the head node for system support tasks.
DefaultProcessorCount 17
DefaultMachinesFile "$TMP/machines"
DefaultLoginCommand "ssh -x"
DefaultBackgroundLoginOption "-n"
DefaultMPIRunCommand "/opt/mpich/gnu/bin/mpirun -np $NSLOTS -machinefile $TMP/machines"
IFNOTHOST { "ec6.ucsf.edu" }
SubmissionCommand "ssh -nx ec6.ucsf.edu /opt/gridengine/bin/lx24-amd64/qsub -masterq ec6.q -pe mpi %p -S /bin/sh"
StatusCommand "ssh -x ec6.ucsf.edu /opt/gridengine/bin/lx24-amd64/qstat -f"
ENDIF
# Skip the unneeded call to ssh.
IFHOST { "ec6.ucsf.edu" }
SubmissionCommand "/opt/gridengine/bin/lx24-amd64/qsub -masterq ec6.q -pe mpi %p -S /bin/sh"
StatusCommand "w; /opt/gridengine/bin/lx24-amd64/qstat -f"
ENDIF

QUEUE
Name "gpu1"
Description "Submits a job to 8 systems.  4 have an Intel Core2 6600 (2.4 GHz),
2 GB RAM, and a Nvidia 8800 GTX (768 MB).  The other 4 have an Intel
P4 (3.2 GHz), 2 GB RAM, and a Nvidia 7900 GTX (512 MB). Please use
this queue only for jobs that can be accelerated by the GPUs."
AcceptsSerial true
AcceptsParallel false
IsCluster false
IFNOTHOST { "gpu1.ucsf.edu" }
SubmissionCommand "ssh -nx gpu1.ucsf.edu /opt/gridengine/bin/lx26-amd64/qsub -S /bin/sh"
StatusCommand "ssh -x gpu1.ucsf.edu /opt/gridengine/bin/lx26-amd64/qstat -f"
ENDIF
# Skip the unneeded call to ssh
IFHOST { "gpu1.ucsf.edu" }
SubmissionCommand "/opt/gridengine/bin/lx26-amd64/qsub -S /bin/sh"
StatusCommand "/opt/gridengine/bin/lx26-amd64/qstat -f"
ENDIF

# For the record, this is the ec20 queue; here it is disabled by the
# enclosing IFHOST { } ... ENDIF construct.
IFHOST { }
QUEUE
Name "ec20"
Description "Submits a job to a cluster of 4 dual-processor x86_64 Linux
machines.  Each machine has 1.9 GB of memory, 0.9 GB of swap space, and two
3.2 GHz Pentium 4 processors."
AcceptsSerial false
AcceptsParallel true
IsCluster true
AutoGeneratedMachinesFile true
# Reserve one processor on the head node for system support tasks.
DefaultProcessorCount 7
DefaultMachinesFile "$TMP/machines"
DefaultLoginCommand "ssh -x"
DefaultBackgroundLoginOption "-n"
DefaultMPIRunCommand "/opt/mpich/gnu/bin/mpirun -np $NSLOTS -machinefile $TMP/machines"
SubmissionCommand "ssh -nx ec20.ucsf.edu /opt/gridengine/bin/lx26-amd64/qsub -masterq ec2.q -pe mpi %p -S /bin/sh"
StatusCommand "ssh -x ec20.ucsf.edu /opt/gridengine/bin/lx26-amd64/qstat -f"
ENDIF

# Since this cluster is dedicated to the t30, only advertise the queue to
# sessions on ec30 itself.
IFHOST { "ec30.ucsf.edu" }
QUEUE
Name "ec30"
Description "Submits a job to a cluster of 4 dual-processor x86_64 Linux
machines.  Each machine has 1.9 GB of memory, 0.9 GB of swap space, and two
3.2 GHz Pentium 4 processors."
AcceptsSerial false
AcceptsParallel true
IsCluster true
AutoGeneratedMachinesFile true
# Reserve one processor on the head node for system support tasks.
DefaultProcessorCount 7
DefaultMachinesFile "$TMP/machines"
DefaultLoginCommand "ssh -x"
DefaultBackgroundLoginOption "-n"
DefaultMPIRunCommand "/opt/mpich/gnu/bin/mpirun -np $NSLOTS -machinefile $TMP/machines"
IFNOTHOST { "ec30.ucsf.edu" }
SubmissionCommand "ssh -nx ec30.ucsf.edu /opt/gridengine/bin/lx24-amd64/qsub -masterq ec30.q -pe mpi %p -S /bin/sh"
StatusCommand "ssh -x ec30.ucsf.edu /opt/gridengine/bin/lx24-amd64/qstat -f"
ENDIF
# Skip the unneeded call to ssh.
IFHOST { "ec30.ucsf.edu" }
SubmissionCommand "/opt/gridengine/bin/lx24-amd64/qsub -masterq ec30.q -pe mpi %p -S /bin/sh"
StatusCommand "w; /opt/gridengine/bin/lx24-amd64/qstat -f"
ENDIF
ENDIF