Chris Waddling
x-ray facility manager
Room S126C
Department of Biochemistry & Biophysics
University of California, San Francisco
Mission Bay, Genentech Hall
600 16th St.
San Francisco CA
94143-2140
(415) 476-8288 (Ph)
(415) 514-4142 (Fax)
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"Intertwined Structure of the DNA-Binding Domain of Intron Endonuclease I-TevI with its Substrate: Functional and Evolutionary Insights", P. VanRoey, C.A. Waddling, K.M. Fox, M. Belfort, and V. Derbyshire, EMBO J., 2001, 20(14), 3631.
36 Articles citing this article:
Brok-Volchanskaya, Vera S.; Kadyrov, Farid A.; Sivogrivov, Dmitry E.; Kolosov, Peter M.; Sokolov, Andrey S.; Shlyapnikov, Michael G.; Kryukov, Valentine M.; Granovsky, Igor E. Phage T4 SegB protein is a homing endonuclease required for the preferred inheritance of T4 tRNA gene region occurring in co-infection with a related phage. Nucleic Acids Research (2008), 36(6), 2094-2105.
Gasiunas, Giedrius; Sasnauskas, Giedrius; Tamulaitis, Gintautas; Urbanke, Claus; Razaniene, Dalia; Siksnys, Virginijus. Tetrameric restriction enzymes: expansion to the GIY-YIG nuclease family. Nucleic Acids Research (2008), 36(3), 938-949.
Eastberg, Jennifer H.; Smith, Audrey McConnell; Zhao, Lei; Ashworth, Justin; Shen, Betty W.; Stoddard, Barry L. Thermodynamics of DNA target site recognition by homing endonucleases. Nucleic Acids Research (2007), 35(21), 7209-7221.
Saravanan, Matheshwaran; Vasu, Kommireddy; Ghosh, Soumitra; Nagaraja, Valakunja. Dual Role for Zn2+ in Maintaining Structural Integrity and Inducing DNA Sequence Specificity in a Promiscuous Endonuclease. Journal of Biological Chemistry (2007), 282(44), 32320-32326.
Robbins, Justin B.; Stapleton, Michelle; Stanger, Matthew J.; Smith, Dorie; Dansereau, John T.; Derbyshire, Victoria; Belfort, Marlene. Homing endonuclease I-TevIII: dimerization as a means to a double-strand break. Nucleic Acids Research (2007), 35(5), 1589-1600.
Spyrakis, Francesca; Cozzini, Pietro; Bertoli, Chiara; Marabotti, Anna; Kellogg, Glen E.; Mozzarelli, Andrea. Energetics of the protein-DNA-water interaction. BMC Structural Biology (2007), 7 No pp. given.
Dunin-Horkawicz, Stanislaw; Feder, Marcin; Bujnicki, Janusz M. Phylogenomic analysis of the GIY-YIG nuclease superfamily. BMC Genomics (2006), 7 No pp. given.
Liu, Qingqing; Derbyshire, Victoria; Belfort, Marlene; Edgell, David R. Distance determination by GIY-YIG intron endonucleases: discrimination between repression and cleavage functions. Nucleic Acids Research (2006), 34(6), 1755-1764.
Gimble, Frederick S. Engineering homing endonucleases for genomic applications. Nucleic Acids and Molecular Biology (2005), 16(Homing Endonucleases and Inteins), 177-192.
Galburt, Eric A.; Jurica, Melissa S. His-cys box homing endonucleases. Nucleic Acids and Molecular Biology (2005), 16(Homing Endonucleases and Inteins), 85-102.
Van Roey, Patrick; Derbyshire, Victoria. GIY-YIG homing endonucleases - beads on a string. Nucleic Acids and Molecular Biology (2005), 16(Homing Endonucleases and Inteins), 67-83.
Chevalier, Brett; Monnat, Raymond J., Jr.; Stoddard, Barry L. The LAGLIDADG homing endonuclease family. Nucleic Acids and Molecular Biology (2005), 16(Homing Endonucleases and Inteins), 33-47.
Stoddard, Barry L. Homing endonuclease structure and function. Quarterly Reviews of Biophysics (2005), 38(1), 49-95.
Van Roey, Patrick; Belfort, Marlene; Derbyshire, Victoria. Homing endonuclease I-TevI: An atypical zinc finger with a novel function. Zinc Finger Proteins (2005), 35-38.
Edgell, David R.; Stanger, Matthew J.; Belfort, Marlene. Coincidence of Cleavage Sites of Intron Endonuclease I-TevI and Critical Sequences of the Host Thymidylate Synthase Gene. Journal of Molecular Biology (2004), 343(5), 1231-1241.
Edgell, David R.; Derbyshire, Victoria; VanRoey, Patrick; LaBonne, Stephen; Stanger, Matthew J.; Li, Zhong; Boyd, Thomas M.; Shub, David A.; Belfort, Marlene. Intron-encoded homing endonuclease I-TevI also functions as a transcriptional autorepressor. Nature Structural & Molecular Biology (2004), 11(10), 936-944.
Windbichler, Nikolai; Schroeder, Renee. Double duty. Nature Structural & Molecular Biology (2004), 11(10), 910-911.
Pingoud, Alfred; Noeel, Ann-Josee; Pingoud, Vera; Steuer, Shawn; Wende, Wolfgang. Homing endonucleases: tools and targets for protein engineering. Enzyme Functionality (2004), 325-351.
Berman, Helen M.; Westbrook, John; Feng, Zukang; Iype, Lisa; Schneider, Bohdan; Zardecki, Christine. The Nucleic Acid Database. Methods of Biochemical Analysis (2003), 44(Structural Bioinformatics), 199-216.
Hsia, Kuo-Chiang; Chak, Kin-Fu; Liang, Po-Huang; Cheng, Yi-Sheng; Ku, Wen-Yen; Yuan, Hanna S. DNA Binding and Degradation by the HNH Protein ColE7. Structure (Cambridge, MA, United States) (2004), 12(2), 205-214.
Vanamee, Eva Scheuring; Hsieh, Pei-chung; Zhu, Zhenyu; Yates, David; Garman, Elspeth; Xu, Shuang-yong; Aggarwal, Aneel K. Glucocorticoid Receptor-like Zn(Cys)4 Motifs in BslI Restriction Endonuclease. Journal of Molecular Biology (2003), 334(3), 595-603.
Liu, Qingqing; Belle, Archana; Shub, David A.; Belfort, Marlene; Edgell, David R. SegG Endonuclease Promotes Marker Exclusion and Mediates Co-conversion from a Distant Cleavage Site. Journal of Molecular Biology (2003), 334(1), 13-23.
Sitbon, Einat; Pietrokovski, Shmuel. New types of conserved sequence domains in DNA-binding regions of homing endonucleases. Trends in Biochemical Sciences (2003), 28(9), 473-477.
N. Guhan and K. Muniyappa. Structural and Functional Characteristics of Homing Endonucleases. Crit. Rev. Biochem. Mol. Biol., June 1, 2003; 38(3): 199 - 248.
N. Guhan and K. Muniyappa. Mycobacterium tuberculosis RecA intein, a LAGLIDADG homing endonuclease, displays Mn2+ and DNA-dependent ATPase activity. Nucleic Acids Res., July 15, 2003; 31(14): 4184 - 4191.
McLaughlin, William A.; Berman, Helen M. Statistical models for discerning protein structures containing the DNA-binding helix-turn-helix motif. Journal of Molecular Biology (2003), 330(1), 43-55.
M. Landthaler and D. A. Shub. The nicking homing endonuclease I-BasI is encoded by a group I intron in the DNA polymerase gene of the Bacillus thuringiensis phage Bastille. Nucleic Acids Res., June 15, 2003; 31(12): 3071 - 3077.
Edgell, David R.; Stanger, Matthew J.; Belfort, Marlene. Importance of a Single Base Pair for Discrimination between Intron-Containing and Intronless Alleles by Endonuclease I-BmoI. Current Biology (2003), 13(11), 973-978.
S. S. Krishna, I. Majumdar, and N. V. Grishin. Structural classification of zinc fingers: SURVEY AND SUMMARY. Nucleic Acids Res., January 15, 2003; 31(2): 532 - 550.
W. Wu, D. W. Wood, G. Belfort, V. Derbyshire, and M. Belfort. Intein-mediated purification of cytotoxic endonuclease I-TevI by insertional inactivation and pH-controllable splicing. Nucleic Acids Res., November 15, 2002; 30(22): 4864 - 4871.
Van Roey, Patrick; Meehan, Lisa; Kowalski, Joseph C.; Belfort, Marlene; Derbyshire, Victoria. Catalytic domain structure and hypothesis for function of GIY-YIG intron endonuclease I-TevI. Nature Structural Biology (2002), 9(11), 806-811.
Galburt, Eric A.; Stoddard, Barry L. Catalytic mechanisms of restriction and homing endonucleases. Biochemistry (2002), 41(47), 13851-13860.
L. M. Seligman, K. M. Chisholm, B. S. Chevalier, M. S. Chadsey, S. T. Edwards, J. H. Savage, and A. L. Veillet. Mutations altering the cleavage specificity of a homing endonuclease. Nucleic Acids Res., September 1, 2002; 30(17): 3870 - 3879.
A. B. Dean, M. J. Stanger, J. T. Dansereau, P. Van Roey, V. Derbyshire, and M. Belfort. Inaugural Article: Zinc finger as distance determinant in the flexible linker of intron endonuclease I-TevI. PNAS, June 25, 2002; 99(13): 8554 - 8561.
Belfort, Marlene; Derbyshire, Victoria; Parker, Monica M.; Cousineau, Benoit; Lambowitz, Alan M. Mobile introns: pathways and proteins. Mobile DNA II (2002), 761-783, Color Plates 46-47.
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